PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7552_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 215aa    MW: 23978.7 Da    PI: 6.6342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7552_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.91.9e-213584255
                                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                        +y+GVr+++ +g+W+AeIrdp     +  r++lg+f taeeAaka+++a+k+++g
  cra_locus_7552_iso_2_len_992_ver_3 35 RYRGVRQRP-WGKWAAEIRDPH----KgVRVWLGTFNTAEEAAKAYDEAAKRIRG 84
                                        7********.**********72....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-393598IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-233592IPR016177DNA-binding domain
PfamPF008473.8E-153584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-333592IPR001471AP2/ERF domain
PROSITE profilePS5103224.2633592IPR001471AP2/ERF domain
PRINTSPR003675.6E-123647IPR001471AP2/ERF domain
CDDcd000189.40E-274391No hitNo description
PRINTSPR003675.6E-125874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
VTTTVRGRNP PQEAPAAAAG ATSSFDQESG ERRRRYRGVR QRPWGKWAAE IRDPHKGVRV  60
WLGTFNTAEE AAKAYDEAAK RIRGDKAKLN FPPPDQHHHH HPPPPLPPPP LLHTPQPSPK  120
RRCTEMPPPV MDYYAPATNM TPYDDLKDQF SSLESFLGLE PEITTLSSST TMTTTTSSTA  180
GNEFVGGMNE SDPVDLWMMN ELVSVQGQNN QDFLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-233692360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-233692663ATERF1
3gcc_A2e-233692663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455978.13e-48PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427363e-41RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A068TRG93e-51A0A068TRG9_COFCA; Uncharacterized protein
STRINGVIT_05s0077g01860.t015e-47(Vitis vinifera)